PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045403 | ||||||||
Common Name | LOC102584888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27497.1 Da PI: 5.5208 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.5e-09 | 86 | 130 | 4 | 51 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 ++ rE+ RRdr+N++f eL ++l + + +K +K++iL A + + PGSC0003DMP400045403 86 SKACREKLRRDRLNERFLELSSVLDPG---RPPKTEKVAILSDAQRML 130 6789**********************8...88**********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.265 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.65E-7 | 85 | 138 | No hit | No description |
Pfam | PF00010 | 2.6E-6 | 86 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-12 | 87 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-11 | 87 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-7 | 88 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEVDSSGNPN WLFDYELITD ITSAASVTVT DFQSPATIDF SWPAQTIYAS SNLIAETDYT 60 FADSEVSKEA SSRKRLKSEW CSSPRSKACR EKLRRDRLNE RFLELSSVLD PGRPPKTEKV 120 AILSDAQRML IELRTETQKL KESNEELQEK IKELKAEKNE LRDEKRRLKE EKENLEQQVK 180 SLASKPGFLS HPSAVGAAFT AQGQVAAGNK LMPFIGYPSV AMWQFMQPAV VDTSQDHVLR 240 PPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045403 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240290 | 1e-145 | AC240290.1 Solanum tuberosum chromosome 7 clone RHPOTKEY032K01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360579.1 | 0.0 | PREDICTED: transcription factor ILR3-like | ||||
Refseq | XP_006360580.1 | 0.0 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-83 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | M1CH14 | 1e-179 | M1CH14_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067294 | 1e-180 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 6e-70 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045403 |
Entrez Gene | 102584888 |