PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045347
Common NameLOC102579231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 197aa    MW: 22481.8 Da    PI: 9.0898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045347genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-18755254
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                          +y+GVr+++ +g+Wv+eIr+p        +r +lg+f tae+Aa+a+++a++ + 
  PGSC0003DMP400045347  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRLWLGTFETAEDAARAYDEAARLMC 55
                          69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.82E-36666No hitNo description
SMARTSM003807.8E-40770IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-34764IPR001471AP2/ERF domain
PROSITE profilePS5103221.206764IPR001471AP2/ERF domain
PfamPF008474.1E-11756IPR001471AP2/ERF domain
PRINTSPR003675.5E-11819IPR001471AP2/ERF domain
PRINTSPR003675.5E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MARAQQRYRG VRQRHWGSWV SEIRHPLLKT RLWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNMP QTSSSKLLST TLTAKLHKCY MASLQMTKTS PQEQKIAKNA TNVQESVINS  120
YKMKQQMLVP KPSVQLTHYH EEAKTVNLGV IRKVEDQVLE GIPQFVKPLE DDHIEQMIEE  180
LLDYGSIELC SNVPSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-18664160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0776260.0AY077626.1 Lycopersicon esculentum ethylene response factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353664.11e-148PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-74ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM1CGW61e-146M1CGW6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000672181e-147(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-54ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]