PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045299 | ||||||||
Common Name | LOC102589240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 328aa MW: 35025.6 Da PI: 7.9123 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.6 | 1.3e-39 | 40 | 159 | 5 | 89 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ PGSC0003DMP400045299 40 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsks 128 899***************************************************************99987777777777444445555 PP TCP 89 ..............................k 89 + PGSC0003DMP400045299 129 aplfihggattmlgfhhqipgnsfgqdpdeN 159 5666666666666666656566664433220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.652 | 43 | 97 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.7E-38 | 43 | 184 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEFRESNSKN NQDGGSNSNN NNNNNSNENN NNAISTKVVK KPSKDRHTKV DGRGRRIRMP 60 ALCAARVFQL TKELGHKSDG ETIEWLLQQA EPSIIAATGT GTIPANFSTL NVSLRSSGTT 120 ISAPPSKSAP LFIHGGATTM LGFHHQIPGN SFGQDPDENF MKKRYREDTT AATTSPSSSS 180 AKPERTGVQG HEPDQESKPG SLNPSSYIPA PAMWAVGPAA GNVGNTFWML PGTSSTMQRI 240 GGFELPGGGR FSPVQLGSMF LQQPQPVQQL GLGVTETNMG MLASMNAYNS SSRGSGIDLG 300 MNLEQHHHHQ NQPQGSDSGD ENHKDSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045299 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209513 | 0.0 | AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence. | |||
GenBank | AC211087 | 0.0 | AC211087.2 Solanum lycopersicum chromosome 6 clone C06SLm0132E21, complete sequence. | |||
GenBank | GQ496331 | 0.0 | GQ496331.1 Solanum lycopersicum TCP transcription factor 13 (TCP13) mRNA, complete cds. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353608.1 | 0.0 | PREDICTED: transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 3e-66 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | M1CGS5 | 0.0 | M1CGS5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067150 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 2e-58 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045299 |
Entrez Gene | 102589240 |
Publications ? help Back to Top | |||
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