PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045200 | ||||||||
Common Name | LOC102585376 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25195.3 Da PI: 8.6287 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 87 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g ++AeIrdp + k +r +lg++ t+++Aa a++ a+ k++g PGSC0003DMP400045200 87 RYIGVRRRQ-WGTFAAEIRDP---NrKGARLWLGTYETPKDAALAYDDAAFKIRG 137 699***887.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.82E-21 | 87 | 146 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.326 | 87 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-29 | 87 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.06E-17 | 87 | 147 | No hit | No description |
Pfam | PF00847 | 1.3E-10 | 87 | 137 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-32 | 87 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 88 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 127 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MNPVDDEIFS SDFDLLESMK QYLLNDFDFS EFFSPSNNVE LPNSPTSSFG SVGNTFLVET 60 TPTKDQTWGP VVARDEHHHV PEDDWRRYIG VRRRQWGTFA AEIRDPNRKG ARLWLGTYET 120 PKDAALAYDD AAFKIRGSKA RLNFPHLAGS NISKPARVKG SRCLPSPSSS SLSSSSTSEN 180 GARKRKIDVI NSIAKAKLVC HSLIKFTDVG ITLSKERSCF SSCLNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-24 | 86 | 145 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-24 | 86 | 145 | 4 | 63 | ATERF1 |
3gcc_A | 2e-24 | 86 | 145 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045200 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348007.1 | 1e-168 | PREDICTED: ethylene-responsive transcription factor 13-like | ||||
Swissprot | Q40479 | 2e-35 | ERF2_TOBAC; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | M1CGJ7 | 1e-166 | M1CGJ7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067018 | 1e-167 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 4e-35 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045200 |
Entrez Gene | 102585376 |
Publications ? help Back to Top | |||
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