PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045166 | ||||||||
Common Name | LOC102589769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 29203.2 Da PI: 6.5977 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g PGSC0003DMP400045166 92 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 141 69****887.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.3E-13 | 92 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 92 | 150 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.2E-36 | 92 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 92 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.551 | 92 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-32 | 93 | 151 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEDHNEFSIS SSTTTSSFTS CCSNNNCLSS TSTSSTSSNC FHESIAKTSP NDHYKCKSKK 60 SSKKIQDGNE EEDDNKKIRR KNEGVVDEKH PTYRGVRKRN WGKWVSEIRQ PRKKSRIWLG 120 TYPTAEMAAR AHDVAALAIK GDSAYLNFPH LADQLPRPAS TSPKDIQAAA AKAAAANIFL 180 EEKSQLTELH SSHSSTNLAS QELLNSPSMD HDDPFFDLPD LTIDRVDQND RYQYPISTWQ 240 LAGADSGMFR LDEPFLWECY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-19 | 86 | 150 | 8 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045166 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233521 | 0.0 | AC233521.1 Solanum tuberosum cultivar RH89-039-16 chromosome 1 clone RH165C24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347933.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
Swissprot | Q8LBQ7 | 9e-60 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | M1CGG5 | 0.0 | M1CGG5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066977 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045166 |
Entrez Gene | 102589769 |
Publications ? help Back to Top | |||
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