PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400045049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 48111 Da PI: 7.5449 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.2 | 9.5e-16 | 286 | 331 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq PGSC0003DMP400045049 286 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 331 9************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.35E-17 | 278 | 335 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-19 | 279 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.815 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-18 | 286 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-13 | 286 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-18 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 442 aa Download sequence Send to blast |
MNQCVPSWDL DDSTVPRKNP IQTQSNSLAA DVPSLNYEVA ELTWENGQLA MHGLGPPRAN 60 NKPISSYGGT LESIVNQATR CNDVPPHLHG KSTVDRNKNG GDEVVPWFNN HNAVAYAPPA 120 TGLVTMTKDA LVPCSRNTSN SDNHRSVHVP GIDGSTHVGS CSGATNSRDW MVAPRMRVRP 180 TKREWNSRTD MISVSGSETC GGDSRQLTVD TFDREFGTTM YTSTSMGSPE NTSSDKQCTN 240 RTGDDHDSVC HSRDEREAGD DEDDNNKKGS KNSSCFTKRK RAAAIHNQSE RKRRDKINQR 300 MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVHMMSRM NMSPAMMLPL AMQQQLQMSM 360 MGMGMGMGMG MGVAGVFDIN NLSRPNIPGL PSFLHPSAAT AAFMQPMTSW DNSSAAPPPP 420 PAMPDPLAAL LACQSQVIKQ G* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 278 | 293 | RKRAAAIHNQSERKRR |
2 | 289 | 294 | ERKRRD |
3 | 290 | 295 | RKRRDK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400045049 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347913.1 | 0.0 | PREDICTED: transcription factor UNE10 | ||||
TrEMBL | M1CG84 | 0.0 | M1CG84_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066807 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00050.1 | 1e-79 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400045049 |
Publications ? help Back to Top | |||
---|---|---|---|
|