PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044726
Common NameLOC102600464
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 403aa    MW: 44715.1 Da    PI: 8.2146
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044726genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.37.3e-33258313156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k+r++W+peLH+rFv+a++qLGGs++AtPk+i++lm+v+gLt+++vkSHLQkYRl+
  PGSC0003DMP400044726 258 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRDLMQVDGLTNDEVKSHLQKYRLH 313
                           79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.18255315IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-30255316IPR009057Homeodomain-like
SuperFamilySSF466895.38E-18256316IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26258313IPR006447Myb domain, plants
PfamPF002499.4E-8260311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGSIPAELSL DCRPSFIPKS ITDFLRQLSL IRNVPDKLSQ IDDYITRLED EMRKIDAFKR  60
ELPLSVLLVK DAIVALREES MQYRKSRTEP VLEEFIPLKK SSHEDTKAEI TKDKDSREKM  120
SWMSSVQLWN SENTDEVINK QPSKSELKVD TQRSPEEGNS SVTEDPFQSC KTMNVGKAFS  180
VPFKGYSGFS VTAVRKDNKD ELPGLSLHTP GITKLREDTV TSGLNSKYNG SRGGLSSVAG  240
CQSNIRTGSL AQQQSSRKQR RCWSPELHRR FVDALQQLGG SQVATPKQIR DLMQVDGLTN  300
DEVKSHLQKY RLHTRRVPNS QTQPANQSGV ALGNLWMSQG QYGEPSKQSS SQSGSPQGPL  360
HLAGSCGGTS TTVGDSMEEE DDVKSENHSW KNHVLTSGKI DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-14258311154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13258311255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346440.10.0PREDICTED: uncharacterized protein LOC102600464
TrEMBLM1CFF30.0M1CFF3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.16e-57G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]