PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044725
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 291aa    MW: 32649 Da    PI: 8.888
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044725genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.41.2e-11258282125
               G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                           k+r++W+peLH+rFv+a++qLGGs+
  PGSC0003DMP400044725 258 KQRRCWSPELHRRFVDALQQLGGSQ 282
                           79*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-9255282IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGSIPAELSL DCRPSFIPKS ITDFLRQLSL IRNVPDKLSQ IDDYITRLED EMRKIDAFKR  60
ELPLSVLLVK DAIVALREES MQYRKSRTEP VLEEFIPLKK SSHEDTKAEI TKDKDSREKM  120
SWMSSVQLWN SENTDEVINK QPSKSELKVD TQRSPEEGNS SVTEDPFQSC KTMNVGKAFS  180
VPFKGYSGFS VTAVRKDNKD ELPGLSLHTP GITKLREDTV TSGLNSKYNG SRGGLSSVAG  240
CQSNIRTGSL AQQQSSRKQR RCWSPELHRR FVDALQQLGG SQGLNFILLM *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044725
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346440.10.0PREDICTED: uncharacterized protein LOC102600464
TrEMBLM1CFF20.0M1CFF2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663520.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.18e-31G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]