PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044718
Common NameLOC102598046
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 296aa    MW: 32623.9 Da    PI: 6.5295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044718genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20163212255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  PGSC0003DMP400044718 163 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFTTAEEAARAYDKAAIEFRG 212
                           59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.21E-34162219No hitNo description
Gene3DG3DSA:3.30.730.108.3E-32163220IPR001471AP2/ERF domain
PfamPF008475.3E-14163212IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22163220IPR016177DNA-binding domain
PROSITE profilePS5103224.948163220IPR001471AP2/ERF domain
SMARTSM003802.6E-37163226IPR001471AP2/ERF domain
PRINTSPR003676.6E-12164175IPR001471AP2/ERF domain
PRINTSPR003676.6E-12186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MHWLNKRFRP TSNLNSNSLQ NNNQFQQQQP RLTGDEEYSV MVATLKNVIN GNIPVQNNQE  60
FNVFSPYNYS TATTTTTTTT VTSSSSPSTS MSTSFEQVLG VPAEQEPCQF CRIQGCLGCD  120
IFGTTFSSSS SSAPAAVAAP IADNKKKGSS TTTVAIAKKK KKNYRGVRQR PWGKWAAEIR  180
DPRKAARVWL GTFTTAEEAA RAYDKAAIEF RGPRAKLNFS FADYTVDTQE QQSTLSSSPQ  240
QLPEEPQQSQ TANNNSDFGN EIWDQLMGDN EIQDWLTMMN FNGDSSDSGG NVHSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-24162219159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144161KKKGSSTTTVAIAKKKKK
2156162AKKKKKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044718
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346432.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLM1CFE50.0M1CFE5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-26redox responsive transcription factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]