PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400044705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28873.6 Da PI: 10.4774 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.7e-16 | 125 | 214 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k ++ps+v +l lpk+f++ h + +++t++l de+g++++ + ++++ l++GW++F +++L gD ++F+l++ PGSC0003DMP400044705 125 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSSDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSISHRLLKGDLLIFRLIEP-- 205 889********************8884..34678****************888888....***********************9974.. PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v ++r PGSC0003DMP400044705 206 CKMKVYIVR 214 335777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-19 | 119 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-22 | 119 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.90E-21 | 123 | 214 | No hit | No description |
Pfam | PF02362 | 3.1E-13 | 125 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-19 | 125 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 125 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEERNFIPVK RRTKSCKKRQ QQVEPHRLKS TSHSSASTST QTDPLSMIKT VQLDRKKMIP 60 KKPRSVKSKA KQVKSNHPRK AESIKRKGSK RTRINDLYDD VEAKYSVMER AEKVLSRLPD 120 EFPSFAKCML PSNVAHGFWL HLPKSFCNMH LPSSDTTVIL VDEWGNEYKT SYLLERNGLS 180 AGWRGFSISH RLLKGDLLIF RLIEPCKMKV YIVRVNGQEV VDAALCLMNW ETLNTSTELG 240 NFVLSACPPL LL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400044705 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-111 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-111 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346416.1 | 1e-177 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X1 | ||||
Refseq | XP_006346417.1 | 1e-178 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X2 | ||||
TrEMBL | M1CFD3 | 0.0 | M1CFD3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066321 | 1e-177 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400044705 |
Publications ? help Back to Top | |||
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