PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044664
Common NameLOC107060369
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 308aa    MW: 34179.8 Da    PI: 7.5956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044664genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.9e-11105148855
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er RR+++++ fe+L  l+P++     +K +K++i  +Av++I +Lq
  PGSC0003DMP400044664 105 TERERRKKMRTLFETLHVLVPNL----PTKADKSTIIYEAVNHILKLQ 148
                           7*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.50E-1195149No hitNo description
SuperFamilySSF474598.64E-1495159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.31397147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-12102159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-5105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8105148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.04E-7224282No hitNo description
Gene3DG3DSA:3.30.70.2603.3E-6226284No hitNo description
PROSITE profilePS516719.285228307IPR002912ACT domain
CDDcd048737.29E-7229271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MNGSGENNHG LPWGTNDLWS YLNLNDIQVG SGETFEGDKL PDPTRSDTCQ PLTVINEVVE  60
PTIDVGKKRS PPIRKRNGKE IAEPNSGADE AKGEKESEHK IHIWTERERR KKMRTLFETL  120
HVLVPNLPTK ADKSTIIYEA VNHILKLQNT FKKLESQKLE RLEEYSIRLM SSQKVGNSWE  180
KYLGDQGSTN NSTAITPTTH GASPLIPKGF MTWSSPNVIL NVCGEDAHIS VCCPKKPGLF  240
TIICYVLEKH NINIVSAQIS SDQFRSMFMI QAHAKGGSGV AQFSGAFTVE DMYKQAANEI  300
ILLTTPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-162HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163703.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLM1CF960.0M1CF96_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000662640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-48bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]