PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044663
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 305aa    MW: 33738.3 Da    PI: 7.62
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044663genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-13102145855
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er RR+++++ fe+L  l+P++      K +K++i+ kAv++I++Lq
  PGSC0003DMP400044663 102 TERERRNKMRTLFETLHALVPNL----PAKADKSTIVDKAVNHIQKLQ 145
                           6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.32294144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1596156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-1598157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-1399146No hitNo description
PfamPF000103.5E-10102145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-7102150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.68E-5226268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNEGGENDHG LYADVWSYLD VNDHQVGSGE TFEGNKLLDP TRSDTCKPLT IINEVVEVSD  60
DVAKKRSPSN RKKNGKGIAE SNSGADGAEV RRASEHEIHI WTERERRNKM RTLFETLHAL  120
VPNLPAKADK STIVDKAVNH IQKLQNTFKK LESQKLERLK EYSIKLMSSQ KVGNSWEKYV  180
GDQGSTNNST TITPITHGAS PLIPTGFMTW SSLNVILNIC GEDAHISVCC PKKPGLFTII  240
CYVLEKHKID IVFAQISSDQ FRSMFMIQAH AKGGSGVAQF SGAFTVEDMY KQAANEIILL  300
TTPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044663
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-152HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163703.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLM1CF950.0M1CF95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000662610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-49bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]