PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044661
Common NameLOC107060365
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 306aa    MW: 34150.7 Da    PI: 7.5607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044661genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11103146855
                           HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er RR+++++ fe+L el+P++      K +K++i+ +Av++I +Lq
  PGSC0003DMP400044661 103 TERERRKKMRTLFETLHELVPNL----PAKADKSTIVYEAVNHILKLQ 146
                           6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-1492157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-1193147No hitNo description
PROSITE profilePS5088813.68195145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1299156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9103146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-5103151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.25E-6222275No hitNo description
Gene3DG3DSA:3.30.70.2609.7E-6224282No hitNo description
PROSITE profilePS516718.895226305IPR002912ACT domain
CDDcd048731.44E-6227294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNGGGENNHG LPWETNDFWS YLNLNDNQIG SEETFEGDKL PDPTRSDTCQ PLTVVNEVVT  60
TDVGKKRSPP NRKRNGKGIA EPNSGVDGAE GKRESEHEIH IWTERERRKK MRTLFETLHE  120
LVPNLPAKAD KSTIVYEAVN HILKLQNTFK KLESQKLKRL EEYSIRLMGS QKIGNSWEKY  180
VGDQGSTCNS TTITPTNHGA SPLIPTSFMT WSSPNVILNV CGEDAHISVC CPKKPGLFTM  240
ICYVLEKHKI DIVSAQISSD QFRSMFMIQA HAKGESGITQ FSVAFKVEER LKQAATEIMS  300
LATPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044661
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163699.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLM1CF930.0M1CF93_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000662570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-43bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]