PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044613
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HB-other
Protein Properties Length: 556aa    MW: 60541.6 Da    PI: 4.635
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044613genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.32.2e-12315367355
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           kR t+ +  +++L e F+ n+yp+++++ +L k+lgLt  qV+ WF N R  +
  PGSC0003DMP400044613 315 KRKTHGEVATKRLYESFKDNQYPDRDAKGKLGKELGLTAYQVSKWFENARHCH 367
                           7888899999***************************************9755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-12307364IPR009057Homeodomain-like
PROSITE profilePS5007112.876310370IPR001356Homeobox domain
SuperFamilySSF466894.28E-12311374IPR009057Homeodomain-like
SMARTSM003892.4E-10312374IPR001356Homeobox domain
CDDcd000861.03E-10315371No hitNo description
PfamPF000468.1E-10315368IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MVLLFLAMLT VPPDDEGWLC PGCDCKVDCI DLLNDLQGTD LSVTDSWEKV YPKEAAAAAS  60
GEKLDDISGL PSDDSEDDDY NPETPDVGKN DSEDESSSDE SDFYSASEDL AEAPPKDDEI  120
LGISSEDSED DDFNPDDPDK DEPVKTESSS SDFTSDSEDF NLIVDTNRLQ GDEQGVSSSV  180
DNSMPNSASQ EEKAKVGKAK GNSLKDELSY LMQSDSPLVS AKRHIERLDY KKLHDETYGN  240
GSSESSDEDY DDGPLPKVRK LRNAKGAMTS PSSTPADIKH QSGKQKGSGR ASDSGISEKL  300
KVGGAGTSES PSSGKRKTHG EVATKRLYES FKDNQYPDRD AKGKLGKELG LTAYQVSKWF  360
ENARHCHRHS SHWNTIMSQK VSKESPSKLQ IIGEPLGTES NSIIAFCNGV GKLEQPKQRL  420
NGEKGHAIDK SEEDLFIQDA SGKKSSEPTK KVYTTNQGSE DTPRNKTSKK QKAKVGTANS  480
QNDNTTEQAS DDTPCNKTSK KHKAKVGTAN SQNDNTTDQG LDDTPQSKTR KKPTVRVDTP  540
NSQNVRRSSR LQKQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314318KRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044613
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346339.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_006346341.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_006346342.10.0PREDICTED: pathogenesis-related homeodomain protein
TrEMBLM1CF570.0M1CF57_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661860.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-19Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]