PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044383

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 259aa MW: 29632.8 Da PI: 6.4058

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044383	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.3	5.4e-18	31	84	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PGSC0003DMP400044383 31 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 84 456899***********************************************9 PP
2	HD-ZIP_I/II	132.5	1.6e-42	30	122	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++da+k+en++L++++++L++ PGSC0003DMP400044383 30 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFDAIKAENDALQTQNQKLHA 118 69**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 e+++ PGSC0003DMP400044383 119 EIMS 122 9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-19	8	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.75E-19	22	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	26	86	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	29	90	IPR001356	Homeobox domain
CDD	cd00086	3.59E-15	31	87	No hit	No description
Pfam	PF00046	2.4E-15	31	84	IPR001356	Homeobox domain
PRINTS	PR00031	9.5E-6	57	66	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	61	84	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.5E-6	66	82	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.2E-17	86	127	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009744	Biological Process	response to sucrose
GO:0048826	Biological Process	cotyledon morphogenesis
GO:0080022	Biological Process	primary root development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSFSGMDGNN ACEENHGEDD LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ 60 LARALGLQPR QIAIWFQNRR ARWKTKQLEK DYEVLKRQFD AIKAENDALQ TQNQKLHAEI 120 MSLKNREQPT ESINLNKETE GSCSNRSENS SEIKLDISRT PAIDSPLSNH HPNISSRPFF 180 PPSMIRSNNN NNNNGVVVPH QLFHINSSSS RQDLKLMDQN TTTTNNNSSV KEESLSNMFC 240 GIDDQTSFWP WLEQQHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	86	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00225	DAP	Transfer from AT1G69780	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044383

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF011556	0.0	AF011556.1 Lycopersicon esculentum jasmonic acid 1 (LEJA1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006363243.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	2e-99	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	M1CEL2	0.0	M1CEL2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400065805	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-101	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044383

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]