PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400044186 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 201aa MW: 22852.4 Da PI: 8.6652 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.2 | 2.7e-10 | 162 | 191 | 1 | 35 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgk 35 s+y+GV++++++grW+++I+d + k+++lg+ PGSC0003DMP400044186 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGT 191 78*******************......55******8 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MWNLNDSPDH RRDYEGKGVE RSISNSSSSA VEELYGSEEE DEFLEQNGLK GKKKKSIPSK 60 IFGFSMIAPP NNNNDDNLSS ESEPPVTRQF FPVDESEIGS GNFNDRSCRF PRAHWAGVKF 120 YQPEPSTAVL GKGSELSQVQ VQVQVQVQPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WDCGKQVYLG TVFFFHLFLS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400044186 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006360214.1 | 1e-137 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
TrEMBL | M1CE44 | 1e-146 | M1CE44_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065501 | 1e-136 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 3e-25 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400044186 |
Publications ? help Back to Top | |||
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