PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044086
Common NameLOC102603812
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 454aa    MW: 49919 Da    PI: 6.5
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044086genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06639336
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                           r C+ ++++ + l+C+ +   lC  C +  H+ 
  PGSC0003DMP400044086  6 SRPCDFCNQQIAVLYCRADTAKLCLFCDQLVHSA 39
                          678**************************99954 PP
2zf-B_box24.84.7e-084993341
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           ++C++++++++++ C +++  lC++C    H +      H+++p
  PGSC0003DMP400044086 49 SQICDNCGSEPVSIRCDTDKLVLCQECDWDAHGScavsgaHDRSP 93
                          579*************************99994488888888776 PP
3CCT61.23.3e-21405448144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           R +a++RYkeK+k R+++K+irYesRKa+A++R+RvKGrFvk++
  PGSC0003DMP400044086 405 RGNAMQRYKEKKKIRRYDKHIRYESRKARADTRKRVKGRFVKAN 448
                           7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-10451IPR000315B-box-type zinc finger
PROSITE profilePS501199.456451IPR000315B-box-type zinc finger
CDDcd000215.38E-7739No hitNo description
PROSITE profilePS501199.7124794IPR000315B-box-type zinc finger
PfamPF006438.0E-65093IPR000315B-box-type zinc finger
CDDcd000213.66E-75194No hitNo description
SMARTSM003360.745294IPR000315B-box-type zinc finger
PROSITE profilePS5101714.723405447IPR010402CCT domain
PfamPF062031.2E-15405447IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSPGESRPCD FCNQQIAVLY CRADTAKLCL FCDQLVHSAN ALSKKHLRSQ ICDNCGSEPV  60
SIRCDTDKLV LCQECDWDAH GSCAVSGAHD RSPVEGFSGC PSASDLASAW GLDIDSKKLH  120
QQHTVLEFPS WMSKDAPPPS SVLLQDLMVP SANNSAIYST KQTPTCGKQK QVIFKQLIEL  180
FKRDLADGVG AGAEDLVPKI PNATSDWQGN VNMLVMDGVN QKLEQQQPQN VPFTSSIMPH  240
NPIDSDQMVE RNILWRGNSF DQNTQIWDFN LGQLRSHEQS SSLEADYSES DMAYMMKSYG  300
ELIKGTSLAT SKGLGLSGIN CSLAHDDMTA FSNDSNNQAA SQGPATSESN NLPRIKTSSD  360
SGYVKTKCCG VSTDMNFMDQ SIVVGGDNTG EETLKADMEL LAKNRGNAMQ RYKEKKKIRR  420
YDKHIRYESR KARADTRKRV KGRFVKANES PDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044086
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158845.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLM1CDV40.0M1CDV4_SOLTU; B-box zinc finger protein 6
STRINGPGSC0003DMT4000653770.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67032126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-104B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]