PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400044063 | ||||||||
Common Name | LOC102603810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LBD | ||||||||
Protein Properties | Length: 106aa MW: 11764.3 Da PI: 3.9206 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 40.9 | 6.1e-13 | 1 | 40 | 61 | 100 |
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++e PGSC0003DMP400044063 1 MVYEANARLRDPVYGCAGAICQLQKQVNELQVQLAKAQAE 40 69*********************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 5.4E-11 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 9.419 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MVYEANARLR DPVYGCAGAI CQLQKQVNEL QVQLAKAQAE VVNMQCEQAN FMTLFCMEMT 60 QSPQASPPQQ SLDNFTNIPQ YGGSQNNMSI LDENNVGSIW ETLWT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400044063 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 6e-88 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 6e-88 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343464.1 | 2e-73 | PREDICTED: LOB domain-containing protein 1-like | ||||
TrEMBL | M1CDT5 | 4e-72 | M1CDT5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065346 | 7e-73 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-22 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400044063 |
Entrez Gene | 102603810 |
Publications ? help Back to Top | |||
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