PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400044012

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 293aa MW: 32936.5 Da PI: 7.931

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400044012	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	6.8e-40	26	86	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknkk s PGSC0003DMP400044012 26 EQQPQKCPRCDSANTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKKLS 86 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	24	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MSSQTLESML VCTKPDQDQK KPRPAEQQPQ KCPRCDSANT KFCYYNNYSL TQPRYFCKSC 60 RRYWTKGGTL RNVPVGGGCR KNKKLSSTTS AKRSSHDNIS PNISNPIPSY DSSTDLSLAF 120 ARLQKQTNAH LEIDQEHDNN NMSMMYNTGN NCTSTTFLDA LRGGFLENSP NHHGLFHHNM 180 YNYANMGQLV ENGEIGMSYD QDQMSIGTST TMMTSIVKQE MCNMARSAEG HDLNNSNNNN 240 KVLCGFPWQQ MNGDHHVNNM NTNDFEYSTN KQSWNGFGGS SNWHGLINSP LM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400044012

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149302	0.0	AC149302.1 Solanum demissum chromosome 11 clone PGEC400L14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006366395.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
Swissprot	Q84TE9	9e-41	DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBL	M1CDP2	0.0	M1CDP2_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400065271	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-41	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400044012

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]