PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400044011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 300aa    MW: 33833.4 Da    PI: 7.5182
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400044011genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.77.1e-403393262
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknkk s
  PGSC0003DMP400044011 33 EQQPQKCPRCDSANTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKKLS 93
                          57899*****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-313191IPR003851Zinc finger, Dof-type
PfamPF027012.4E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0963791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDHQQQEMSS QTLESMLVCT KPDQDQKKPR PAEQQPQKCP RCDSANTKFC YYNNYSLTQP  60
RYFCKSCRRY WTKGGTLRNV PVGGGCRKNK KLSSTTSAKR SSHDNISPNI SNPIPSYDSS  120
TDLSLAFARL QKQTNAHLEI DQEHDNNNMS MMYNTGNNCT STTFLDALRG GFLENSPNHH  180
GLFHHNMYNY ANMGQLVENG EIGMSYDQDQ MSIGTSTTMM TSIVKQEMCN MARSAEGHDL  240
NNSNNNNKVL CGFPWQQMNG DHHVNNMNTN DFEYSTNKQS WNGFGGSSNW HGLINSPLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400044011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1493020.0AC149302.1 Solanum demissum chromosome 11 clone PGEC400L14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366395.10.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLM1CDP10.0M1CDP1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000652710.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-41TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]