PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400044011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 300aa MW: 33833.4 Da PI: 7.5182 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.7 | 7.1e-40 | 33 | 93 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknkk s PGSC0003DMP400044011 33 EQQPQKCPRCDSANTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKKLS 93 57899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 31 | 91 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-33 | 35 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MDHQQQEMSS QTLESMLVCT KPDQDQKKPR PAEQQPQKCP RCDSANTKFC YYNNYSLTQP 60 RYFCKSCRRY WTKGGTLRNV PVGGGCRKNK KLSSTTSAKR SSHDNISPNI SNPIPSYDSS 120 TDLSLAFARL QKQTNAHLEI DQEHDNNNMS MMYNTGNNCT STTFLDALRG GFLENSPNHH 180 GLFHHNMYNY ANMGQLVENG EIGMSYDQDQ MSIGTSTTMM TSIVKQEMCN MARSAEGHDL 240 NNSNNNNKVL CGFPWQQMNG DHHVNNMNTN DFEYSTNKQS WNGFGGSSNW HGLINSPLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400044011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149302 | 0.0 | AC149302.1 Solanum demissum chromosome 11 clone PGEC400L14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366395.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like | ||||
TrEMBL | M1CDP1 | 0.0 | M1CDP1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065271 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-41 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400044011 |
Publications ? help Back to Top | |||
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