PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400043926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 160aa MW: 17809.1 Da PI: 6.9006 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.3 | 4.6e-07 | 11 | 32 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG C+ G++Ck +H++ PGSC0003DMP400043926 11 CPVFEATGNCPKGSKCKLHHPK 32 *****************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-5 | 5 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.568 | 5 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MQCQKKHTYV CPVFEATGNC PKGSKCKLHH PKNRRKGVKR KALSELKNGR GRYFGSPHID 60 ITECITAGSE KPSVKGNNDI FLEGKFIDFI GLDGSDEEEQ TIDQRSEEKP LCESGPAEMQ 120 LDDLDELIKP MRLINRNRSV GSSPYIDSPS DMTTSYVSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400043926 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357327.1 | 1e-104 | PREDICTED: uncharacterized protein LOC102595922 isoform X2 | ||||
Refseq | XP_015168862.1 | 1e-104 | PREDICTED: uncharacterized protein LOC102595922 isoform X1 | ||||
Refseq | XP_015168863.1 | 1e-104 | PREDICTED: uncharacterized protein LOC102595922 isoform X3 | ||||
Refseq | XP_015168864.1 | 1e-104 | PREDICTED: uncharacterized protein LOC102595922 isoform X4 | ||||
TrEMBL | M1CDG6 | 1e-114 | M1CDG6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065147 | 1e-115 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7568 | 5 | 5 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400043926 |
Publications ? help Back to Top | |||
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