PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043899
Common NameLOC102597153
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 268aa    MW: 29503.8 Da    PI: 7.0595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043899genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.3e-101153444
                          S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          W+ e d  + +a + ++ +   +W++Ia+ ++ g+tl ++k+++
  PGSC0003DMP400043899 11 WSREQDIAFENALATYPEDcvdRWEKIAADVQ-GKTLQEIKNHY 53
                          ********************************.**********9 PP
2Myb_DNA-binding44.63.3e-14122166347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  PGSC0003DMP400043899 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                           7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.694659IPR017884SANT domain
SMARTSM007172.8E-6759IPR001005SANT/Myb domain
SuperFamilySSF466891.73E-11965IPR009057Homeodomain-like
CDDcd001674.23E-81157No hitNo description
Gene3DG3DSA:1.10.10.609.1E-51158IPR009057Homeodomain-like
PfamPF002494.5E-71153IPR001005SANT/Myb domain
PROSITE profilePS5129418.065115171IPR017930Myb domain
SuperFamilySSF466898.22E-17117172IPR009057Homeodomain-like
SMARTSM007175.0E-12119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.3E-18119169IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-11120165IPR009057Homeodomain-like
CDDcd001678.97E-11122167No hitNo description
PfamPF002493.6E-12122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MTVDNSRSSI WSREQDIAFE NALATYPEDC VDRWEKIAAD VQGKTLQEIK NHYEILLDDV  60
SRIESGYVPL PGYNSTFDRS LCHDGGGETT GKKSGVSGRL NSESNDGGKS TKLEQDRRKG  120
VAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRT  180
SIHDITSVNN GDVSVPQVPI TGQTIGSSGK SNKQSPTAPI APIGVGIYGT TTIGQPVTGP  240
LVNVVDQRKI QDLDIMDSSL GFYYSQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1811761176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043899
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360841.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-97SRM1_ARATH; Transcription factor SRM1
TrEMBLM1CDE60.0M1CDE6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000651020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-94MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]