PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400043872 | ||||||||
Common Name | LOC102601547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 20608.9 Da PI: 4.4911 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.6 | 4.2e-15 | 35 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r++ +g+Wv+eIr+p++ ++r++lg+f +e+Aa a++ a+++l+g PGSC0003DMP400043872 35 NFRGIRQR--NGKWVSEIREPRK---TTRIWLGTFPNPEMAAVAYDVAALALKG 83 589**975..6*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.93E-30 | 34 | 92 | No hit | No description |
Pfam | PF00847 | 1.7E-8 | 34 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-27 | 35 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.849 | 35 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-29 | 35 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 36 | 47 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-18 | 36 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.7E-6 | 73 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MADYHFNVSP NDNSPPLENL SPTGGTLLSP RRHPNFRGIR QRNGKWVSEI REPRKTTRIW 60 LGTFPNPEMA AVAYDVAALA LKGPDAQLNF PDCAYSYPIP ASLSAADIRA AAANAAAARA 120 PPLSEFSTAG GTAAAAAGGG QEFVDEEEIF GMPKLLDDMA EAMLVSPPRM HQSTSYDESP 180 ENSDADSLWS YP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400043872 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340524.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor ERF025-like | ||||
Swissprot | Q9FJ90 | 2e-50 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | M1CDC2 | 1e-138 | M1CDC2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400065067 | 1e-138 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 8e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400043872 |
Entrez Gene | 102601547 |
Publications ? help Back to Top | |||
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