PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043846
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 398aa    MW: 43515.4 Da    PI: 6.5312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043846genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12325370655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR ri +++ +L++l P+     +k  + a++L +Av+YIk+Lq
  PGSC0003DMP400043846 325 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 370
                           689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16322386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-12323374No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15324390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9325370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDKLNNFLFS GGGGGGSSFK NGEGLEPEFF RSKEMMGSDV FQQQSQFQQS NSGGLTRYRS  60
APSSFFAGIL DGDGNNSGEN FITGDGSSSS DSDSMFTALL NSNDTTNNNG TRDLNDQNQK  120
NQLQFGSSLK QEIGEEIEFG NENGVQNRYE NGGVSYGVGV QMQTRANLSN GNGGSNLIRQ  180
SSSPAGFFNG FMREVGNFGA SVGTNKEAST STNGFSNHIS YSTNQSSTSN FMPSIAENES  240
WNDSSFNSLK RSRDGDLKMF SNSFSGMTNQ NDESRNYTSS GLTHHLSLPK TSSEMAAIEK  300
YLQFQQDSVP CKIRAKRGCA THPRSIAERM RRTRISERMK KLQDLFPNMD KQTNTADMLD  360
LAVDYIKDLQ KQVQTLNDKK AKCSCTSKQL QYSNGTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043846
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229606.10.0transcription factor bHLH130
TrEMBLM1CDA40.0M1CDA4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000650290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-65bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]