PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043655
Common NameLOC107058095
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 376aa    MW: 42017.7 Da    PI: 4.5305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043655genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192575155
                   AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  PGSC0003DMP400043655 25 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 75
                          589*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-322582No hitNo description
Gene3DG3DSA:3.30.730.109.5E-282682IPR001471AP2/ERF domain
PROSITE profilePS5103219.5332683IPR001471AP2/ERF domain
PfamPF008476.1E-142675IPR001471AP2/ERF domain
SMARTSM003804.1E-372689IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-192684IPR016177DNA-binding domain
PRINTSPR003675.2E-82738IPR001471AP2/ERF domain
PRINTSPR003675.2E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MARKRKAEGL TKIHDAAAIL NGARKKFVGV RQRPSGRWVA EIKDTIQKIR VWLGTFDTAE  60
EAARAYDEAA CLLRGANTRT NFWPSSSPST SALPPKITKL LLRRLRERNK SVAAAANDDD  120
SSSSTSLAAI GHQQQKQQEK IGNTVADFSD LSYTDYLNYP EDNVTDNNNA IANVSAITRE  180
LTSIVQYGYN QEFNFQPVNN YESLSAEIIE IGEAINTDVE DIIESNIDFQ FLNEIGSCNY  240
SPFDLAEELS MVETMEQGMD FGEETSMVSE AMKRMNYERK FSASLYAFNG ITECLKLKMK  300
SGGLTRSDQL SRLQNACKRN LDKERENEKC NVGMTENKDE ENSSEEVAFS SMESAYDSEF  360
SLWSSIDLPP LCFVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1426821471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158904.10.0PREDICTED: ethylene-responsive transcription factor 7-like
TrEMBLM1CCV00.0M1CCV0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000647520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-23related to AP2 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]