PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043612
Common NameLOC102600000
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 466aa    MW: 51076.4 Da    PI: 4.7548
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043612genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.2e-39111170261
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s
  PGSC0003DMP400043612 111 PDKIIPCPRCNSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 170
                           7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-30108168IPR003851Zinc finger, Dof-type
PfamPF027011.2E-31113169IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.574115169IPR003851Zinc finger, Dof-type
PROSITE patternPS013610117153IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MTDPAIKLFG RTIQFPDSSG AHGDDSLPED NNGEEEDEEA HKDDFGGNLD DDEDEMEILT  60
GKVLQDQNSE PTRTDSMKEP PVDNDCSTRP SKSEEEQGEA SNSQEKILKK PDKIIPCPRC  120
NSMETKFCYF NNYNVNQPRH FCKSCQRYWT AGGTMRNVPV GAGRRKNKNS IPHYRQISVS  180
ETLSNAQTAY PNGVQQPILA FGSPTPLCES MASVLNIADK TMHNCSQNGF HKPQEPGVPV  240
SYVAGDNGDD HSRRSSVTSA NSEDEVNKTV PDLLKKNCHN FPPYMTCYPG APWPYPCSPV  300
PWNSAVPPPG YCPPGFPMPF YPAASYWGYT VAGSWNVPWM PPATVSLIQT PTTSGPNSPT  360
LGKHSRDENV QKPLSSMEEP SNESNPEKCL WVPKTLRIDD PGEAAKSSIW ATLGIKHDTV  420
DSVGGSPFSA FQPKNDDNNR VSENSTVLQA NPAALSRSVN FNESL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363404.10.0PREDICTED: cyclic dof factor 3-like
TrEMBLM1CCR20.0M1CCR2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000646950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-91cycling DOF factor 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]