PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400043440 | ||||||||
Common Name | LOC102593641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 39790.5 Da PI: 8.871 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.5 | 6.1e-54 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelvv+yLkk+v+g ++++ ++i+e+d+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d PGSC0003DMP400043440 16 LPPGFRFHPTDEELVVHYLKKRVAGAPISV-DIIAEIDLYKFDPWELPAKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTD 103 79****************************.99***************7777899********************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+ PGSC0003DMP400043440 104 KPIFTSgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRV 143 ****9977788***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-64 | 11 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.961 | 16 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MESTDSSTGT RHQPQLPPGF RFHPTDEELV VHYLKKRVAG APISVDIIAE IDLYKFDPWE 60 LPAKAIFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPIFTSG GTQKVGVKKA 120 LVFYGGKPPK GVKTNWIMHE YRVVENKTNN KPPGCDHIVA NKKGSLRLDD WVLCRIYKKN 180 NTQRSIDDLN DMLGSIPQNV PNSILQGVKP SNYGTILLEN ESNMYDGIMN NTNDMINNNN 240 RSIPQFSSKR SMHGGLYWNI DETTTTTEGN HSPNTKRFLV ENNRDDGLNM NNIARITNHE 300 QSSSIANFLS HFPQNTSIQQ EQQEQQVLGS LSDGVVFRQP YNQVTGMNWY S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-77 | 1 | 182 | 9 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400043440 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY573802 | 0.0 | AY573802.1 Lycopersicon esculentum NAC domain protein (NAC-NOR) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362947.1 | 0.0 | PREDICTED: NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-105 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | M1CCC7 | 0.0 | M1CCC7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064428 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-105 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400043440 |
Entrez Gene | 102593641 |
Publications ? help Back to Top | |||
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