PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043421
Common NameLOC102601454
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 389aa    MW: 42575.8 Da    PI: 6.2342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043421genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.1e-062783161154
                           HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++ +L++l+ +      +K + a++L +A+eYIk L
  PGSC0003DMP400043421 278 VRKEKMGDRITTLQQLVSPF-----GKTDTASVLSEAIEYIKFL 316
                           5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.77E-7259320No hitNo description
PROSITE profilePS5088813.129267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-12277336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-9277338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAEEFQLGGG NWWENNTSTS SRNRFDSSGS SITPTTSTSA TTINYSSNWP IETDHVDIKP  60
RAFLDSVSVS QSSAHDDRGG GGGGGGGVLS SQDSNFQIMG LGLTSQPHDW NHQSLLNYED  120
SSSQMNIRGF SLDQNNSIFS HSSNYEVVDN HQVLHSSTTN SWSKFPQFLR TSPSSEQPPL  180
PPPAPPLPPP HSQLHFSNNT PFWNASAASM TDVPSSLFPS NLNNIPQLPN NTTIDEKAKN  240
MGEVRDINKI ISKKTTGTET SNKRPRNETA TPSPAFKVRK EKMGDRITTL QQLVSPFGKT  300
DTASVLSEAI EYIKFLHDQI GVLSAPYMES GASMQHLQSD IKSEDVREGR NKDLRSRGLC  360
LVPISSTFPV THETNVDLWT PTFGSTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043421
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-160HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158727.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT31e-62BH123_ARATH; Transcription factor bHLH123
TrEMBLM1CCA80.0M1CCA8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000643990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]