PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400043420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28089.2 Da PI: 6.3416 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.3 | 9.7e-07 | 140 | 180 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ +L++l+ + +K + a++L +A+eYIk L PGSC0003DMP400043420 140 AKVRKEKMGDRITTLQQLVSPF-----GKTDTASVLSEAIEYIKFL 180 5789999*************98.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.462 | 131 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-5 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.05E-7 | 138 | 184 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-12 | 140 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-9 | 141 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGLGLTSQPH DWNHQSLLNY EDSSSQMNIR GFSLDQNNSI FSHSSNYEVV DNHQVLHSST 60 TNSWSKFPQF LRTSPSSEQP PLPPPAPPLP PPHSQLHFSN NTPFWNASAA SMTDVPSSLF 120 PSNLNNIPQL PNNTTIDEKA KVRKEKMGDR ITTLQQLVSP FGKTDTASVL SEAIEYIKFL 180 HDQIGVLSAP YMESGASMQH LQSDIKSEDV REGRNKDLRS RGLCLVPISS TFPVTHETNV 240 DLWTPTFGST FR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400043420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233122 | 1e-142 | AC233122.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-12d17 map 10, complete sequence. | |||
GenBank | AC240192 | 1e-142 | AC240192.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-107b5 map 10, complete sequence. | |||
GenBank | AC240224 | 1e-142 | AC240224.1 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-61e6 map 10, complete sequence. | |||
GenBank | HG975522 | 1e-142 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362967.2 | 0.0 | PREDICTED: transcription factor bHLH123-like isoform X2 | ||||
TrEMBL | M1CCA7 | 0.0 | M1CCA7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064399 | 1e-165 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400043420 |
Publications ? help Back to Top | |||
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