PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043359
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 372aa    MW: 41161.2 Da    PI: 8.6506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043359genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.61.9e-201257147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  PGSC0003DMP400043359 12 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                          79******************************.***********985 PP
2Myb_DNA-binding56.94.6e-1866108347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  PGSC0003DMP400043359  66 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.76762IPR017930Myb domain
SuperFamilySSF466891.26E-329105IPR009057Homeodomain-like
SMARTSM007175.7E-181160IPR001005SANT/Myb domain
PfamPF002493.7E-201257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-271365IPR009057Homeodomain-like
CDDcd001673.82E-171456No hitNo description
SMARTSM007173.8E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129421.46764113IPR017930Myb domain
CDDcd001672.62E-1266109No hitNo description
PfamPF002491.5E-1566108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MASSKRDMDR VKGPWSPEED ELLQQLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTPE EDETIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSLSADE  120
GNELADQIFE NQQPPLKRSV SAGSAMPVSG FHFSPGSPSG SDSDSSLHVT SSSQSHVFKP  180
VARTGGVFPQ SIDISSPPVD PPTSLSLSLP GVDLAEFSNR SADSTQSKNP FQLLLPPMQI  240
PPPPPPPPPP PPQATTVPFE RVSAIQQSLQ NPDFGKNAGG EQPDKVFVPF SQELLGVMQE  300
MIKTEVRNYM MGVEQKQQFQ QQQQHYQQQP QQFQQQNHQL PSGLGLGLCM QQASDGFRDR  360
AANRMRLSKF D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-40111123104C-Myb DNA-Binding Domain
1msf_C2e-40111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043359
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220510.0AF122051.1 Solanum tuberosum clone 22 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305610.10.0transcription factor MYB44-like
SwissprotO231602e-92MYB73_ARATH; Transcription factor MYB73
TrEMBLM1CC460.0M1CC46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000643060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-80myb domain protein r1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]