PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400043245
Common NameLOC102597862
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 535aa    MW: 57554.2 Da    PI: 7.4316
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400043245genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.7e-391422472113
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                           ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++ 
  PGSC0003DMP400043245 142 PPPKRQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNISLRSSGSTLSAPp 230
                           56799****************************************************************99987777777777555543 PP

                   TCP  89 ............kaaksaakskksqksaasalnlake 113
                                       +                    la+ 
  PGSC0003DMP400043245 231 sksaphsfhsalA--------------------LAAA 247
                           3333333333322....................3222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-38147254IPR005333Transcription factor, TCP
PROSITE profilePS5136928.542148202IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MELTDLQNNN TNSNSKQQTT TNNTTPSPPL HHQHQHQYQL LSQHHHHQQQ LQQQHGRASV  60
PFMTSISIQP SAQAPITNSA SPTATSASPS TSSPTPPQQQ LVDASLAIAT RSDSLVDPNK  120
KSQPQQQLAI QQTQHVQQQL QPPPKRQTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG  180
HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNISLR SSGSTLSAPP SKSAPHSFHS  240
ALALAAAHHT PHPFEEGFSH MLGFHHNTHL LTQNPIADSI PGGSGGGDGT GGGEGADNYL  300
RKRYREDLFK EEGSSNQQGE ASGGSSSPSN KQFKGNSSQL PNKPNSQEGV AGQSSNMLRH  360
TNMMPATGLW AVAPPPTSGT TGSPFWMLPV TASGSGQTLS APMASTSGTA TLESQMWPFP  420
MGSSNTIQAP LHFMPRFNIP PNLEFQSGRG NPLQLGSMLM QQQQQPSQHL GLGMSETNLG  480
MLAALNAYSR GGLNMNSDHQ QSHSLDHHQQ QQQHQQQHQP QPTDSDEDDP NNSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400043245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349348.10.0PREDICTED: transcription factor TCP8
TrEMBLM1CBU20.0M1CBU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114842125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-57TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]