PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400043181 | ||||||||
Common Name | LOC102598839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 140aa MW: 15869.1 Da PI: 8.6258 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.4 | 2.1e-14 | 15 | 62 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ k+n+ ++ R++ i K EL +LCd++v+ +i +++g+l++++ PGSC0003DMP400043181 15 SNKKTNNPKSYQVRKECIKRKSMELATLCDIKVCTVITGPNGQLQTWP 62 67899******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 4.71E-15 | 9 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.475 | 9 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-10 | 17 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MADEDQSKKA KEDQSNKKTN NPKSYQVRKE CIKRKSMELA TLCDIKVCTV ITGPNGQLQT 60 WPDNLDACKE VLDLYSQNLK PEKKHKESST PVPEPEEEQG EKDLLTLVES KLTAVNRRIR 120 FLENKNVAIA DKGKRKIIE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400043181 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246105 | 1e-107 | AC246105.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-15l21 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-107 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349351.1 | 1e-97 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
TrEMBL | M1CBP7 | 2e-96 | M1CBP7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064083 | 4e-97 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39810.1 | 2e-11 | AGAMOUS-like 98 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400043181 |
Entrez Gene | 102598839 |
Publications ? help Back to Top | |||
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