PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400043066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 138aa MW: 15508.8 Da PI: 9.0507 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.2 | 1.3e-17 | 50 | 125 | 14 | 89 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 + +p +f++++ + +++t+tl+ +sg+s v l++++++++ +t+GW +F ++n+Lk+gD+++F+ld++++ PGSC0003DMP400043066 50 PYMHIPTEFCQSNALF--QNTTMTLTGPSGKSCPVSLRICNGGKTlyACITRGWHDFFSSNKLKVGDVCIFQLDRSKS 125 4689*********877..6679***************9999988888889***********************98743 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-19 | 34 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-18 | 35 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.78E-17 | 36 | 125 | No hit | No description |
SMART | SM01019 | 9.3E-7 | 36 | 129 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.884 | 37 | 137 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-15 | 50 | 125 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 138 aa Download sequence Send to blast |
MYISFGFDAL FLTSVEKRKL EGDQPHYQCM KGSSEFTARI KEYNVRKRSP YMHIPTEFCQ 60 SNALFQNTTM TLTGPSGKSC PVSLRICNGG KTLYACITRG WHDFFSSNKL KVGDVCIFQL 120 DRSKSDSNSI AIDVRVL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400043066 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-128 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356280.1 | 3e-88 | PREDICTED: B3 domain-containing protein REM9-like | ||||
TrEMBL | M1CBG6 | 3e-99 | M1CBG6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063932 | 1e-87 | (Solanum tuberosum) |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400043066 |
Publications ? help Back to Top | |||
---|---|---|---|
|