PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400043024 | ||||||||
Common Name | LOC102602867 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 34959.5 Da PI: 9.8693 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.7 | 1.3e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ PGSC0003DMP400043024 18 RGHWRPAEDERLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 2.9e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++++E+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ + PGSC0003DMP400043024 70 RRPFSEDEEERLIGAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 114 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.579 | 13 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-15 | 17 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-29 | 17 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.80E-13 | 21 | 62 | No hit | No description |
SMART | SM00717 | 6.0E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.816 | 69 | 119 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.5E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.64E-10 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-20 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MAEGGGSGDD TIRSSCQRGH WRPAEDERLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINR RPFSEDEEER LIGAHRIHGN KWALISRLFP GRTDNAVKNH WHVLMARKQR 120 EQSKICGKRS LYQQQQQQHD NFDSKSSCYG FRRRNNNNNN NNNNTRIQEG NYGSKINFFE 180 FQNPNKDRVF SMSTTYSSEF CGSHLFRESS IDQKSLCQNN LSFSSHGRGG GGGDNNCKRS 240 TTFQNPFSYA DRNERVVNIS HSTFSFGKIL RENIEQQQKY GEEAREKKDI PFIDFLGVGI 300 SS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-30 | 18 | 118 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-29 | 18 | 118 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-29 | 18 | 118 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-30 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-30 | 18 | 118 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400043024 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356314.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | M1CBE0 | 0.0 | M1CBE0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063862 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-65 | myb domain protein 52 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400043024 |
Entrez Gene | 102602867 |
Publications ? help Back to Top | |||
---|---|---|---|
|