PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042954
Common NameLOC102595190
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 647aa    MW: 73106.6 Da    PI: 6.9777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042954genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.73.2e-1122656361374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l+ lL++cA+a++s d + a++lL r++e+++p+gd ++Rla+y+++AL+arl+++++ ly a +ps+ s    ++ l+a+k+f  ++P
  PGSC0003DMP400042954 265 LRALLTQCAQAMASYDSRTANELLMRIREHSTPHGDGTERLAHYLANALEARLSGTGTALYTAYAPSRIS---AANILKAYKAFITACP 350
                           5789************************************************************999998...899************* PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           +  +s++ aN+ I + ++g+ ++HiiDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p+sg   + ++eetg+rL+k++++++vpf
  PGSC0003DMP400042954 351 FKLLSNMFANKYIRKVIAGAPKIHIIDFGILYGFQWPCLIQGLSMRAGGPPELRITGIDLPQSGfkPAGRVEETGRRLEKYCKRFNVPF 439
                           ***************************************************************9999********************** PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                            f++ +ak++e+++le+L+++++E+l+Vn+ ++l +++de+v  +s+rd+vL+l+++++P+++++   +   n++ F++rf eal ++s
  PGSC0003DMP400042954 440 VFKA-IAKKWESITLEDLEIQRDEVLVVNSLYRLGNIPDETVVPNSPRDAVLNLIRRIRPDLFIHGALNGTFNTPFFVTRFREALFHFS 527
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           +lfd++ea++p+e+e+r+  E+e+ +r+++nv+aceg+er+er et+++W+ r  +aGFk+vpl+++++k ++  +r  + + ++v+e+
  PGSC0003DMP400042954 528 SLFDMFEATMPHEDEDRKLFEEEVYARDAMNVIACEGTERVERPETYKQWQLRCVRAGFKQVPLDQEIVKIVRNKVRSEYHRDFSVDED 616
                           ********************************************************************************999****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                            +++++gWk+r ++++S+W+
  PGSC0003DMP400042954 617 GHWMLQGWKGRVIYALSCWK 636
                           *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.922239616IPR005202Transcription factor GRAS
PfamPF035141.1E-109265636IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDPRKDVVQN GVNNHPSFVQ DYLSNHVVGE GDSSSPKEEG ERDYSDAMYK FLSQMLMEED  60
DLENKPCMFH DCMALQAKEK YLSDVLHGSE NNYSPQSVII NPHESSSFLS NYSPDSIESP  120
QWDLNFESPV SVSTLSNHDS FFTSFGNGHF EGGAVNVFRS GSSSNSPTGL REKKNRHRGD  180
VAADLAADQQ RSNKQMATFV HDESEPLEMY DNVLLCLNNP YVEHHSATSV TSYSPPNEAK  240
KASKVGRPRG GRKHSSIVKK EMVDLRALLT QCAQAMASYD SRTANELLMR IREHSTPHGD  300
GTERLAHYLA NALEARLSGT GTALYTAYAP SRISAANILK AYKAFITACP FKLLSNMFAN  360
KYIRKVIAGA PKIHIIDFGI LYGFQWPCLI QGLSMRAGGP PELRITGIDL PQSGFKPAGR  420
VEETGRRLEK YCKRFNVPFV FKAIAKKWES ITLEDLEIQR DEVLVVNSLY RLGNIPDETV  480
VPNSPRDAVL NLIRRIRPDL FIHGALNGTF NTPFFVTRFR EALFHFSSLF DMFEATMPHE  540
DEDRKLFEEE VYARDAMNVI ACEGTERVER PETYKQWQLR CVRAGFKQVP LDQEIVKIVR  600
NKVRSEYHRD FSVDEDGHWM LQGWKGRVIY ALSCWKPTKQ SVKLGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-432696368375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344723.10.0PREDICTED: scarecrow-like protein 30 isoform X1
SwissprotQ9XE581e-176SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM1CB760.0M1CB76_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-179GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]