PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042638
Common NameLOC102588121
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 345aa    MW: 39060.4 Da    PI: 5.9358
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042638genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.32.8e-30501713106
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssss 81 
                           g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k  i+ l+ +          ++++++e ++ +++ s
  PGSC0003DMP400042638  50 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKLDIDTLPPLpvppeyftrfQQPPHEEYSDLQQVRS 138
                           78*************************************************************44444444444444433333333333 PP

                   TCP  82 asnsssg.........kaaksaakskksqksaas 106
                           + ++ ++         k + +++++++s++++++
  PGSC0003DMP400042638 139 QWFNANSapyldhgknK-SIASNHHEESNQEDNH 171
                           33222225566666532.2222222233333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.67451109IPR017887Transcription factor TCP subgroup
PfamPF036347.9E-2751167IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNSSSGNNFQ TKQESNDSKL SSKTTSAPSS SRQWGVNKNP RIVRVSRTFG GKDRHSKVCT  60
IRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLE ATKLDIDTLP PLPVPPEYFT  120
RFQQPPHEEY SDLQQVRSQW FNANSAPYLD HGKNKSIASN HHEESNQEDN HVFTLGNHRS  180
SNLPAMPFNS YNYQWDDQPN SNLSLGHFGH NNSFSSQIDD DHQSHQNTSF PLSLGSSSSP  240
FPSSSQLYFN PITTTFQPIV PSPNYMTNHH PIDPRANMNH FNFLSSNTSH NNPLVMPTLN  300
LISSQIKPFS LNDDPRWMSS RDDDDDDDDD DDDDDNQPHE GRAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1756110155Putative transcription factor PCF6
5zkt_B3e-1756110155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345116.10.0PREDICTED: transcription factor TCP17
TrEMBLM1CAH50.0M1CAH5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000633270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-45plastid transcription factor 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]