PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400042590 | ||||||||
Common Name | LOC102599677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 178aa MW: 20161.7 Da PI: 9.7594 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 1e-16 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI++ s ++ r +lg+f+ aeeAa a++ a++ l+g PGSC0003DMP400042590 31 KFIGVRQRP-SGRWVAEIKETS---QKLRLWLGTFDKAEEAALAYDSAARLLRG 80 899******.7******99942...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.06E-31 | 30 | 90 | No hit | No description |
PROSITE profile | PS51032 | 19.309 | 31 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 31 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-32 | 31 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-27 | 31 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 31 | 88 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.7E-7 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-7 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MENSKSSSES LNNSSKNIQQ NKPISSNDGK KFIGVRQRPS GRWVAEIKET SQKLRLWLGT 60 FDKAEEAALA YDSAARLLRG RNAKTNFKNQ GILKPNEENC SLLEKNPRLY QLMKHAIMKK 120 LAGKYQNNER LETEEELVQE SINKEEICEI QLQGSSKVYS SVIVAPSFSN NEKSYQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 29 | 87 | 3 | 62 | ATERF1 |
3gcc_A | 4e-14 | 29 | 87 | 3 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400042590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345066.1 | 1e-126 | PREDICTED: ethylene-responsive transcription factor CRF3-like | ||||
TrEMBL | M1CAC8 | 1e-125 | M1CAC8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063264 | 1e-126 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400042590 |
Entrez Gene | 102599677 |
Publications ? help Back to Top | |||
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