PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400042485 | ||||||||
Common Name | LOC102592550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 48174.9 Da PI: 7.2968 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.5e-16 | 237 | 283 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq PGSC0003DMP400042485 237 VHNQSERRRRDRINQRMKALQRLVPNA-----SKTDKASMLDEVIDYLKQLQ 283 6*************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-19 | 231 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.057 | 233 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.24E-19 | 236 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-14 | 237 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.63E-10 | 238 | 287 | No hit | No description |
SMART | SM00353 | 3.4E-17 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MSHCTVPTWN PRYQRQEHVV EAGEANKYPH VHNQQIQINH LLPMSSKCEE VAELTWEKGQ 60 LGIHGLGGIL SISQAKQTLG RTGDTLESIV HQATHHAKNQ TSIHQNYDQN EDQYLKTGVL 120 YSGGKWGESS QQMAPPQATV LAKKRMRPSE SDPQYGGAED HEYAEGSACA SASATFYREN 180 DTTMVTWPSF DESSRSMKSK TTCDEDSACH VGGSENKEEE HETKRSNSSR RSRAAAVHNQ 240 SERRRRDRIN QRMKALQRLV PNASKTDKAS MLDEVIDYLK QLQAQVQLMS STPRNMTPQM 300 MMPLGMHQHI QMSLLARMGV GVGLGMGMGM FDMTALARAA AAAASATTHP NQMTTAPFNI 360 PFTPPGAFAL PATPANSVSP ATTSTTTNST PFTNPAFLPQ SMDMEFFNNM AALYRQQLAN 420 QSTQIIGSKL NQGDQTE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400042485 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345215.2 | 0.0 | PREDICTED: transcription factor UNE10 | ||||
TrEMBL | M1CA37 | 0.0 | M1CA37_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063117 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5437 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 9e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400042485 |
Entrez Gene | 102592550 |
Publications ? help Back to Top | |||
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