PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042484
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 412aa    MW: 45242.8 Da    PI: 7.9493
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042484genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.3e-16237283455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  PGSC0003DMP400042484 237 VHNQSERRRRDRINQRMKALQRLVPNA-----SKTDKASMLDEVIDYLKQLQ 283
                           6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.9E-19231302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.057233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-19236310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-14237283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.42E-10238287No hitNo description
SMARTSM003533.4E-17239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSHCTVPTWN PRYQRQEHVV EAGEANKYPH VHNQQIQINH LLPMSSKCEE VAELTWEKGQ  60
LGIHGLGGIL SISQAKQTLG RTGDTLESIV HQATHHAKNQ TSIHQNYDQN EDQYLKTGVL  120
YSGGKWGESS QQMAPPQATV LAKKRMRPSE SDPQYGGAED HEYAEGSACA SASATFYREN  180
DTTMVTWPSF DESSRSMKSK TTCDEDSACH VGGSENKEEE HETKRSNSSR RSRAAAVHNQ  240
SERRRRDRIN QRMKALQRLV PNASKTDKAS MLDEVIDYLK QLQAQVQLMS STPRNMTPQM  300
MMPLGMHQHI QMSLLARMGV GVGLGMGMGM FDMTALARAA AAAASATTHP NQMTTAPFNI  360
PFTPPGAFAL PATPANSVSP ATTSTTTNST PFTNPAFLPQ VSNLCLFQIR V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241246ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345215.20.0PREDICTED: transcription factor UNE10
TrEMBLM1CA360.0M1CA36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000631170.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-28bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]