PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400042421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 279aa MW: 30577.2 Da PI: 9.4863 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.5 | 7.5e-06 | 2 | 30 | 23 | 55 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 Lr ++P++ ++K +Ka+ L +++eYI+ Lq PGSC0003DMP400042421 2 LRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 30 89999998....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.591 | 1 | 29 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 2 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-4 | 2 | 34 | No hit | No description |
SuperFamily | SSF47459 | 1.7E-8 | 2 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MLRGIIPNSD QKRDKASFLL EVIEYIHFLQ EKVHKYEESY QGWDNEPPKL QLSKCHRTSH 60 GVSNLPQRII NGSAAALTYA GKFDESIMGI SSANPINVQK LEPNISSPSL KENRQQPGLT 120 NKPTTLPMHP NTFSFSGTSS TAALYSSKLT ADTDKLEPKS QSQFSLSRSH MTDYAIPNAN 180 PERQELPIES GTISISSAYS QGLLNTLTQA LHSSGVDLTQ ANISVQIDLG KRANGRVNSS 240 ASTIKADDVT PSNQPIPKSR VTTTREEPDH AFKRRKTS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400042421 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013786 | 0.0 | BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345090.1 | 0.0 | PREDICTED: transcription factor BIM1 isoform X1 | ||||
TrEMBL | M1C9Z0 | 0.0 | M1C9Z0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063026 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-40 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400042421 |
Publications ? help Back to Top | |||
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