PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400042420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22354 Da PI: 7.7543 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.1 | 4.8e-06 | 2 | 30 | 23 | 55 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 Lr ++P++ ++K +Ka+ L +++eYI+ Lq PGSC0003DMP400042420 2 LRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 30 89999998....9******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.591 | 1 | 29 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-12 | 2 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-5 | 2 | 34 | No hit | No description |
SuperFamily | SSF47459 | 9.81E-9 | 2 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MLRGIIPNSD QKRDKASFLL EVIEYIHFLQ EKVHKYEESY QGWDNEPPKL QLSKCHRTSH 60 GVSNLPQRII NGSAAALTYA GKFDESIMGI SSANPINVQK LEPNISSPSL KENRQQPGLT 120 NKPTTLPMHP NTFSFSGTSS TAALYSSKLT ADTDKLEPKS QSQFSLSRSH MTDYAIPNAN 180 PERQELPIES GTISISSAYS QG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400042420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013786 | 0.0 | BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345090.1 | 1e-144 | PREDICTED: transcription factor BIM1 isoform X1 | ||||
TrEMBL | M1C9Y9 | 1e-147 | M1C9Y9_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1C9Z0 | 1e-147 | M1C9Z0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400063026 | 1e-140 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-23 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400042420 |
Publications ? help Back to Top | |||
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