PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042418
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 537aa    MW: 58418 Da    PI: 7.8665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042418genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.31e-062392711955
                           HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  PGSC0003DMP400042418 239 TFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 271
                           6999*******9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.505220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-10233289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-13237288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-5240275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MAVVHTKAGG YLKTHDFLQP LEQAEKTLMK EETKVEVATM EKTPPPVAAT PSGEHILPGG  60
IGTFSISYLH QRIPKPEASL FSVAQASSTD KNDENSNCSS YTGSGFTLWD ESAVKKGKTG  120
KENSGGDQHV LREAGVNTGG VQPTTSLEWQ SQSSSNHKHN TTALSSLSSA HQSSPLKSQS  180
FLHMITSAKN AQDDDDDDDE DFVIKKEPQS HPRGSLSVKV DGKGNDQKPN TPRSKHSATF  240
QMLRGIIPNS DQKRDKASFL LEVIEYIHFL QEKVHKYEES YQGWDNEPPK LQLVIAMLCS  300
SIYQQLAHLK SKCHRTSHGV SNLPQRIING SAAALTYAGK FDESIMGISS ANPINVQKLE  360
PNISSPSLKE NRQQPGLTNK PTTLPMHPNT FSFSGTSSTA ALYSSKLTAD TDKLEPKSQS  420
QFSLSRSHMT DYAIPNANPE RQELPIESGT ISISSAYSQG LLNTLTQALH SSGVDLTQAN  480
ISVQIDLGKR ANGRVNSSAS TIKADDVTPS NQPIPKSRVT TTREEPDHAF KRRKTS*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042418
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345090.10.0PREDICTED: transcription factor BIM1 isoform X1
SwissprotQ9LEZ32e-66BIM1_ARATH; Transcription factor BIM1
TrEMBLM1C9Y70.0M1C9Y7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000630260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.57e-65bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]