PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400042289
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 284aa    MW: 30109.4 Da    PI: 5.1997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400042289genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-071722131055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  PGSC0003DMP400042289 172 QARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 213
                           67******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.788162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14167232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-6168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-4172213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-6174217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDPPIINEGS FSAANPSSYT LAEIWPFAAA ANGGGNGELG GGGLGLRMSS FTGLLEAAAN  60
SINESTLTEQ SGRSGGGGGA GGGGGGGNVG VRKRDMNSED DFSKFVSTSD ANDLDGSVAK  120
RLKASQSKEE NGASKVEAES SSHTANKGTE QSSKPEPPKD YIHWLSRILI YQARREKISE  180
RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS MKLEAVNSRM NHPIETYPSK  240
DLAPSAFDTT GMIFGTQAPR EYAQGAQSEW LHMQVGNSFD RAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400042289
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-157HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344980.11e-174PREDICTED: transcription factor bHLH79-like
SwissprotQ9LV171e-66BH079_ARATH; Transcription factor bHLH79
TrEMBLM1C9L60.0M1C9L6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000628441e-173(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.12e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]