PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400041980

Common Name

LOC102589719

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TALE

Protein Properties

Length: 307aa MW: 33971 Da PI: 9.1991

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400041980	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	104	136	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LAk++gL+ +qV++WF N R + PGSC0003DMP400041980 104 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 136 89*****************************88 PP
2	BELL	49.8	8.3e-17	1	41	32	72
BELL 32 tvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +v++sFe vaglg+a+p++++A k++S+hF+ Lkdai++q+ PGSC0003DMP400041980 1 MVVASFESVAGLGNAAPFANIAIKTMSKHFKYLKDAIIDQL 41 79************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07526	1.1E-11	1	37	IPR006563	POX domain
PROSITE profile	PS50071	12.034	77	140	IPR001356	Homeobox domain
CDD	cd00086	8.57E-13	80	141	No hit	No description
SMART	SM00389	2.7E-10	80	144	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-17	82	146	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-28	83	144	IPR009057	Homeodomain-like
Pfam	PF05920	5.8E-19	97	136	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010076	Biological Process	maintenance of floral meristem identity
GO:0010077	Biological Process	maintenance of inflorescence meristem identity
GO:0010089	Biological Process	xylem development
GO:0010154	Biological Process	fruit development
GO:0010223	Biological Process	secondary shoot formation
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0048457	Biological Process	floral whorl morphogenesis
GO:0048645	Biological Process	organ formation
GO:0080006	Biological Process	internode patterning
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MVVASFESVA GLGNAAPFAN IAIKTMSKHF KYLKDAIIDQ LQFTTSKSSH HMHGQINCER 60 AVGISGKGIY CQRQETQPVW RPQRGLPERA VTVLRAWLFD HFLHPYPTDS DKVMLAKQTG 120 LSRNQVSNWF INARVRLWKP MVEEIHMLET REGHNKSSQR EEPSNNNNDN NNPIEHFPMS 180 NSHVCESNTP STSTSRLQDL PSKRTRNELP NIPNNIGRVA DSINLSYNGN LSTGVGGGVS 240 LTLGLHQNSG NIGLSEPFPM NAARRFGIDN NTNSGRFIVG GFDEQNGQFG RNNTMVGGQF 300 LHDFGG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	86	144	5	63	Homeobox protein Meis2
3k2a_B	6e-16	86	144	5	63	Homeobox protein Meis2
4xrs_A	6e-16	86	143	1	58	Homeobox protein Meis1
4xrs_B	6e-16	86	143	1	58	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269\|PubMed:12874117, ECO:0000269\|PubMed:12897247, ECO:0000269\|PubMed:13678595, ECO:0000269\|PubMed:15019989, ECO:0000269\|PubMed:15120075, ECO:0000269\|PubMed:15155890, ECO:0000269\|PubMed:16741748}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400041980

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340982.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Swissprot	Q9LZM8	2e-71	BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBL	M1C8Y4	0.0	M1C8Y4_SOLTU; Uncharacterized protein
TrEMBL	M1C8Y5	0.0	M1C8Y5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400062353	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	4e-65	TALE family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400041980
Entrez Gene	102589719

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006] Andrés F, et al. Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant Physiol., 2015. 169(3): p. 2187-99 [PMID:26417007] Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis. Dev. Cell, 2016. 39(2): p. 198-208 [PMID:27666746] Sehra B,Franks RG Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development. Front Plant Sci, 2017. 8: p. 1712 [PMID:29085379] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299]