PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041960
Common NameLOC102587457
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 367aa    MW: 38626 Da    PI: 4.988
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041960genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.4e-36881913109
                   TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                           + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++  +++ +  +     + a
  PGSC0003DMP400041960  88 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsVNGTLKIPTT----SPA 172
                           5699***********************************************************8888844421111111111....111 PP

                   TCP  91 aksaakskksqksaasaln 109
                           a+++ +s+ ++++ a++++
  PGSC0003DMP400041960 173 ANNEGESSTKRRKRAANSE 191
                           1222222222222222232 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-2992175IPR005333Transcription factor, TCP
PROSITE profilePS5136926.31293147IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MASVENNQNI EQEDDEVSDS KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP APSTDMVLLL  60
KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV EGRGRRIRMP AACAARIFQL  120
TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTTS PAANNEGESS  180
TKRRKRAANS EFYEVHEASS FAPVAPIAPQ GLVPVWPVGS GNGLVPTTAF TGGATFYMLP  240
PGTNTTVGAQ LWATPIFNVP GRTISNFVSA MQPGMGYAAG GVSSVAAANE VHLSSSFCVS  300
KSDGNGDKLG NVASAMAPSS SSTGSTTTST TQMLRDFSLE IYDKRELQFM VGSGSSENDQ  360
TSSSKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362699.10.0PREDICTED: transcription factor TCP19
TrEMBLM1C8W50.0M1C8W5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000623270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.24e-67TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]