PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400041960 | ||||||||
Common Name | LOC102587457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 38626 Da PI: 4.988 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.9 | 5.4e-36 | 88 | 191 | 3 | 109 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++ +++ + + + a PGSC0003DMP400041960 88 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsVNGTLKIPTT----SPA 172 5699***********************************************************8888844421111111111....111 PP TCP 91 aksaakskksqksaasaln 109 a+++ +s+ ++++ a++++ PGSC0003DMP400041960 173 ANNEGESSTKRRKRAANSE 191 1222222222222222232 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-29 | 92 | 175 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.312 | 93 | 147 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031347 | Biological Process | regulation of defense response |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MASVENNQNI EQEDDEVSDS KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP APSTDMVLLL 60 KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV EGRGRRIRMP AACAARIFQL 120 TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTTS PAANNEGESS 180 TKRRKRAANS EFYEVHEASS FAPVAPIAPQ GLVPVWPVGS GNGLVPTTAF TGGATFYMLP 240 PGTNTTVGAQ LWATPIFNVP GRTISNFVSA MQPGMGYAAG GVSSVAAANE VHLSSSFCVS 300 KSDGNGDKLG NVASAMAPSS SSTGSTTTST TQMLRDFSLE IYDKRELQFM VGSGSSENDQ 360 TSSSKS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400041960 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362699.1 | 0.0 | PREDICTED: transcription factor TCP19 | ||||
TrEMBL | M1C8W5 | 0.0 | M1C8W5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400062327 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 4e-67 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400041960 |
Entrez Gene | 102587457 |
Publications ? help Back to Top | |||
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