PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041795
Common NameLOC102590952
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 337aa    MW: 36065.9 Da    PI: 7.7258
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041795genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.2e-09171196227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           k e Cr +  +GtC++G++C+F Hg+
  PGSC0003DMP400041795 171 KSETCRWWEDSGTCRFGSKCRFVHGK 196
                           6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.4E-11167199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7168199IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4169196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427169197IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6171196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEFFYGSSND MQASNVHSFD GNVSPINAQN FIGRGRFYPG SKTPILDPYS SSESTGSSSN  60
KVSPLARYLC PNSPVPFISD SPKHRSLVST SSGSRSGSGG GVSRSPLASL ENIEIPLMFR  120
TPVKVEEDVV VMDGILVEPK HGPRAKLLPS TSDSGGRLSS STPANDNSFH KSETCRWWED  180
SGTCRFGSKC RFVHGKEDLC PTAFANRNQS EALLCRSYSS GPSSYGPRGR SVHQQVHSAA  240
SPAKAASMST RTTTTTTLKV FTKDKEPSSS DSSTTSTPTS TISSTDWCPL DDNIEVTLPS  300
TGENCVSRED VNAHIQTVLY GTSGRKRLPA CIDLVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041795
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341826.10.0PREDICTED: uncharacterized protein DDB_G0271670-like
TrEMBLM1C8I40.0M1C8I4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000621060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]