PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041640
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 397aa    MW: 44276.3 Da    PI: 6.4321
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041640genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-192580156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +++ +++t+ q++e+e++F+++++p+ ++r+eL k+lgL+  qVk+WFqN+R+++k
  PGSC0003DMP400041640 25 KKRYHRHTQLQIQEMESFFKECPHPDDKQRKELGKRLGLEPLQVKFWFQNKRTQMK 80
                          688999***********************************************998 PP
2START149.43.2e-472133931164
                           HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
                 START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                           ela +a++elv++a+ +ep+W + +      e + ++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +a 
  PGSC0003DMP400041640 213 ELAVAAMEELVRMAQTGEPLWITGPgpdnsiETLCEEEYVRTFPRGIGpkslgLTTEASRESAVVIMNHINLVEILMDVN-QWTNVFAg 300
                           57899**********************99999999**********999********************************.******** PP

                           ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                 START  78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +a tl+v+s+g      galq+m+ae+q++splvp R+ +fvRy++ + +g+w++vdvS+d+ ++ +    v R++++pSg+li++
  PGSC0003DMP400041640 301 lvsRALTLDVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHADGTWAVVDVSLDNLRPSS----VSRGRRRPSGCLIQE 385
                           ******************************************************************9965....8************** PP

                           ECTCEEEE CS
                 START 157 ksnghskv 164
                           ++ng+skv
  PGSC0003DMP400041640 386 LPNGYSKV 393
                           *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-22880IPR009057Homeodomain-like
SuperFamilySSF466896.27E-191082IPR009057Homeodomain-like
PROSITE profilePS5007116.2772282IPR001356Homeobox domain
SMARTSM003892.6E-172386IPR001356Homeobox domain
PfamPF000464.2E-172580IPR001356Homeobox domain
CDDcd000868.46E-182583No hitNo description
PROSITE profilePS5084832.052204396IPR002913START domain
SuperFamilySSF559611.18E-25205393No hitNo description
CDDcd088752.72E-100208393No hitNo description
SMARTSM002343.1E-26213396IPR002913START domain
PfamPF018523.8E-38214393IPR002913START domain
Gene3DG3DSA:3.30.530.203.1E-4311391IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MADIMENNPS GDDQEPDPNQ RPNKKKRYHR HTQLQIQEME SFFKECPHPD DKQRKELGKR  60
LGLEPLQVKF WFQNKRTQMK AQHERHENSE LRAENEKLRA DNIRYKEALG NTTCPNCGGP  120
ASIGEMSFDE QHLRIENARL REEIDRISGI AAKYVGKPML TYPNLPIGPT RSLDIGVGSF  180
GPQTGLVGEM YSAGDLLRSV SGPIDADKPM IIELAVAAME ELVRMAQTGE PLWITGPGPD  240
NSIETLCEEE YVRTFPRGIG PKSLGLTTEA SRESAVVIMN HINLVEILMD VNQWTNVFAG  300
LVSRALTLDV LSTGVAGNYN GALQVMTAEF QVPSPLVPTR ENYFVRYCKH HADGTWAVVD  360
VSLDNLRPSS VSRGRRRPSG CLIQELPNGY SKVKPL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343296.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_015162427.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLM1C8560.0M1C856_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000618590.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]