PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041406
Common NameLOC102579651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 321aa    MW: 35126 Da    PI: 4.3806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041406genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-2081131155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr++  +g+WvAeIr+p+    r  r +lg+fgta eAa a+++a+++++g
  PGSC0003DMP400041406  81 CKYRGVRQRI-WGKWVAEIREPK----RgSRLWLGTFGTAIEAALAYDEAARAMYG 131
                           79*****998.**********83....46************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1481131IPR001471AP2/ERF domain
CDDcd000181.72E-3181140No hitNo description
SMARTSM003804.9E-3682145IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1982139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-3082140IPR001471AP2/ERF domain
PROSITE profilePS5103220.95682139IPR001471AP2/ERF domain
PRINTSPR003673.1E-98394IPR001471AP2/ERF domain
PRINTSPR003673.1E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAIMDQAANM ATLPLDYSGK RKSRSRRDRT KNVEERLAKW KEYNEKLDSV DDEGKPVRKV  60
PAKGSKKGCM RGKGGPENSR CKYRGVRQRI WGKWVAEIRE PKRGSRLWLG TFGTAIEAAL  120
AYDEAARAMY GPCARLNLPN YPSRDDSDSA SWATTSASDC TVASGGFGGE VCPGEGATTA  180
AGTPLSSVKD EGKDETAGLP GEMEIVEPTS IDQDTLKSGW DCLDNLNLDE MFDVDELLAM  240
LDSTPVSTND FGSDGKQYAY DNNLLSNSPC QPLGDPQEMG QEAPMTFDYA FDFLKPGRQE  300
DLNFNSDDLT FMDLDSELVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1683139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-16821401473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKSRSRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM6417960.0HM641796.1 Solanum tuberosum dehydration responsive element binding protein 1 (DREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353419.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM1C7N50.0M1C7N5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000615410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.17e-40ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]