PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041300
Common NameLOC107057782
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 343aa    MW: 38589.5 Da    PI: 4.9668
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041300genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.91.8e-14711711128
                   NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskk 96 
                           de+l+ +yL + v+g ++e+ + i+ vd+y    P++L   +++++++ + F++ +kk+++gk+ nr  +   g W+   + k+v++ k
  PGSC0003DMP400041300   7 DEQLL-KYLINFVTGMPVEC-DEIRLVDLYGNkMPSQLF-DTTTTNHHHHVFTQLKKKKRNGKNFNRgiVGGGGSWNGINS-KPVYDGK 91 
                           66666.*************9.77******97637****6.555667899******************73344889*98765.9****99 PP

                   NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++g kktL f   ++    +  W+m+ey+l
  PGSC0003DMP400041300  92 RSVIGFKKTLRFE--EN----NHVWIMKEYHL 117
                           99**********7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.0611144IPR003441NAC domain
SuperFamilySSF1019413.92E-156144IPR003441NAC domain
PfamPF023651.0E-67117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGMNIDDEQL LKYLINFVTG MPVECDEIRL VDLYGNKMPS QLFDTTTTNH HHHVFTQLKK  60
KKRNGKNFNR GIVGGGGSWN GINSKPVYDG KRSVIGFKKT LRFEENNHVW IMKEYHLCDK  120
ILEDLRLHGK IRYEDFVVCS IRRKVNWDHI RQNLLASSSS QCQETVKSSA ANVIPSQELN  180
SIFNGNISQV SLLAKESKVT QLPAAIQEEC SVPVVHPETP SVSFGAIEEE CSVPVVHQET  240
PSVSFAAIEE EFSVPVVHQE TSSVSFVAKE SNVPAAKEVE ECSVPVETRP DYDIATYHKE  300
LDAYAASILE TMVPYIPEVQ EDEDEIPLFS EDFYIGHTNL WS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158224.10.0PREDICTED: uncharacterized protein LOC107057782
TrEMBLM1C7F50.0M1C7F5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000613900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]