PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400041296
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 327aa    MW: 36907.4 Da    PI: 4.9758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400041296genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.54.9e-14711611128
                   NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskk 96 
                           de+l+   L k v+g+++++    + vd+y   +P++L  +++++ ++++ F++ +kk+ +gk+ nr  +   g Wk   ++++v++kk
  PGSC0003DMP400041296   7 DEQLMIS-LLKFVSGSSVQF----QLVDLYGNnKPSQLFDTTTTTATKYHVFIQLKKKKGNGKNFNRgiVGGGGSWKGVDNSRPVYDKK 90 
                           6666644.556677777555....6788886548****86666778899******************74445899************** PP

                   NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++++g kkt+ f   ++    +  W+m+eyrl
  PGSC0003DMP400041296  91 KSVIGFKKTFRFE--EK----NHVWIMKEYRL 116
                           ************7..22....458******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.3571144IPR003441NAC domain
SuperFamilySSF1019413.79E-1626143IPR003441NAC domain
PfamPF023654.0E-635116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGMNFDDEQL MISLLKFVSG SSVQFQLVDL YGNNKPSQLF DTTTTTATKY HVFIQLKKKK  60
GNGKNFNRGI VGGGGSWKGV DNSRPVYDKK KSVIGFKKTF RFEEKNHVWI MKEYRLCDKI  120
LKALRLRGHT RHEEEFVVCR ITRSVNSSQV IIPSDHNVEN FLDSLLISSL QCQESFAQNQ  180
FQDLGQSFAQ YQFQENQNLE QSSAAFAQNQ FQENQDLGQL STPNVIPSDE SNSILNGNQI  240
GPVSLVLKES KLCAAIEEEC SVPVVNQQTP SVKEVECSVY DIATYHKELD AYAASVLESM  300
VPQEDEADSI PPFYENFYIG FTDLWS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400041296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158228.11e-168PREDICTED: uncharacterized protein LOC107057785
TrEMBLM1C7F10.0M1C7F1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000613820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]